[Brian]

We found a bug that could cause the due soon problem, and we've checked a fix in for version OmniFocus for iPhone 1.0.2. (1.0.1 has already been submitted to Apple for approval; we cant touch it any more.)

In the meantime, it looks like changing your "Due Soon" time in Settings will kick things in the head and force the badges to update.

I've heard a few reports of the Flagged smart group not updating, but whenever I add a flag to an action, it shows up in the smart group right away. Any clues folks can provide when they see this would be appreciated.