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Originally Posted by malisa View Post

But, as I feared, the script is just changing what you SEE on the desktop version, right? So even if you sync, no change to the ipad. Right?
That's correct it does the equivalent of cmd-clicking in the sidebar on all of the projects (but none of the folders), then focusing on the resulting selection. Nothing changes in the database.

It wouldn't be too terribly difficult to arrange for it to actually turn your folder structure into a flat list, but the code to support toggling back at some future point would be a challenge :-)