Sorry, the contents of those files are entirely dynamically generated, not template based. The best idea I have is to write a script to modify the files following export. If you're up to writing an AppleScript, you could put it in your toolbar to make it better integrated.
As for links to other pages, the tokens we've provided for those paths will work from the template files we provide (index.html, ResourceTemplate.html, TaskTemplate.html). In other words, if you want to add a link from the Resource Report straight to the Task Report, you could just put this in ResourceTemplate.html:
Quote:
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<a href="{@TaskReportPath@}<img class="icon" src="include/tasks.png" alt="Task" />Task Report</a>
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Those tokens are documented in the Help under "Customizing HTML templates".
If this isn't meeting your needs, we listen closely to feature requests, so please drop us a note at our feedback address (Use "Send Feedback..." under the Help menu, preferably).
Thanks!
-Tom