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I still had problems after trying this (several times)

It took a few more (drastic) steps to get things working:

1. I exported the database on my mac to the desktop as an OmniFocus Document

2. I deleted all the files under ~/Library/Application Support/OmniFocus

3. I imported my saved OmniFocus database

(The original database was ~3.2MB, the new one was 32KB)

4. I followed your steps on the iDisk and iPhone

I seems to work now, and syncing takes only a few seconds.