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Hmm. Interesting. When I access the OmniFocus file residing on iDisk using the Finder, I just have one file. If I access the file by way of the MobilMe web interface, the file is shown as a folder with various files residing inside the folder.

I got a little confused when MobilMe was complaining that I had no more space left, after an OmniFocus sync. I have only used 65.6 MB, so I thought it had something to do with OmniFocus and the files I saw in the web interface.