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I don't know of anything specific, but you may have some weird issues if you're syncing the Focus files directly, and also through iCal. So you probably want to do one or the other.

Option 1:We expect that if you have two machines, A and B, syncing OmniFocus A->iCal A->iCal B->OmniFocus B will work, but that's still on my list of things to test. If you take that approach, you'd want to stop syncing the OF files via Unison.

Option 2: I'm not familiar with SyncTogether, but does it have a feature to allow you to choose which iCal calendars to sync? If so, you could tell it not to sync the Focus calendars (the ones starting with "OF:"). Then you can sync your Focus files directly with Unison and sync Focus with iCal on either computer, and not worry about SyncTogether transfering the Focus info also and scrambling things up.

And whatever route you choose, email us if you encounter any unexpected issues.