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Just a thought, but wouldn't a 2 stage sync process solve this where you would tar (or otherwise serialise) the whole directory structure, transfer it and finally untar it, thus completing the whole package move. The only difficulty is freezing it quiesced whilst performing the tar, but that could be done fairly easily with temporary directories either for transactions occurring during the sync or to move the files to prior to the sync process to make sure it happens quicker. Just a thought and interested to hear why this was discounted.

Glyn