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While Together looks nicer than EagleFiler, it's two major downfalls as far as I can tell are:

1. Uses Spotlight for searching which can be slow (EagleFiler maintains it's own index and so is much quicker).
2. No importing or exporting to file's spotlight comments field for tags (although I understand this is planned for v2.1).

The benefit of Together over EagleFiler is that it looks way better, it's tag management within the program is nicer, and it uses Quick Look to display file previews.