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We've gotten scattered reports of this problem, but we can't reproduce it yet.

If you are still having this problem, please do the following:

Open (in your Utilities folder).
Paste the following command into the window:

defaults write com.omnigroup.OmniFocus XMLFileManagerDebug -bool true
then hit Return.

Next, open (in the same folder) and try a sync.

You should see some debug information start to appear in the console window. Please send it to

Then paste the command into the Terminal window again, but change "true" to "false" and hit return again.