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I have a simliar problem, and I haven't been able to reproduce it. Did a search in the forums, but wasn't able to find a similar thread.

When I clip a mail from OS X, sometimes (and it's random as far as I can tell), I am not able to introduce a new project by hitting Cmd-Enter after typing a new project name. I do not usually use Contexts at that point, so I don't know if this problem holds for Contexts as well.

Any ideas how I can fix this? It is really annoying when I'm doing some major cleaning from my mail inbox.