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Gah, go me - I was describing the behavior of the "Remaining" sidebar filter in Context mode, not Available. I'm sorry about that.

The Active sidebar filter setting will show any context with one or more actions assigned in your database. Like lucas mentioned, other filter bar settings may cause that context to appear empty in a particular window. We keep it visible, though, in case you need to add more actions.

Try doing the following:
Select Perspectives -> All items
Select View -> Context Mode
Select View -> Sidebar Filter -> Active

You should be able to click through the contexts in the sidebar now and see which actions have been assigned to those contexts. (If you complete those actions, the context should disappear from the sidebar.)

I wasn't able to find any empty-but-visible contexts in my database using those settings, but if you have some, get in touch with the support ninjas; if there's a bug, we definitely want to fix it.