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How large is your database? (Look in your home folder under Library/Application Support/OmniFocus for the file OmniFocus.ofocus.) Mine grew to several megabytes due to an oddness with the Sync mechanism, even though I'm not currently syncing to any other devices. Enabling Bonjour syncing with the database on the local machine caused the database to shrink to a few hundred kilobytes. After that, I turned off syncing and my database has stayed small.
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Cheers,

Curt