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Stack Overflow usually means memory has been filled.

The main difference between my modified version of Curt's excellent script is:
the script will search all active & non-active items that have a Missing NA tag on it and remove the tag if certain conditions have been met. These conditions are described in the document that you downloaded with the script.

This allows you to correct an action, action group or a project and run the script again. The script will remove the tag from all non-active projects, action groups or tags.

My first thought is: do you keep your completed projects? That is, how often do you archive? You may want to try archiving and see if that helps. Or if you have a lot of nesting going on the script could run into this error.

Also: how much memory do you have? How many projects? What OS & OmniFocus version are you running?

I'll see if I can get to looking at troubleshooting the script when I have a chance. Let me know if you get around this error. Thank you for the feedback.