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Jason, with the latest sneakypeek, here's what I did:

made a new project on my phone, named 'made on iPhone'.
tapped the sync button.
Fired up OmniFocus for Mac.
Did a sync.
The 'made on iPhone' project showed up in my sidebar.

Maybe the project is in your database but just isn't visible? Try selecting "All Items" from the Perspectives menu. Does it appear now?