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Yeah, I agree with CatOne and pvonk. Maybe you'll never need those extra backups (hopefully you won't!), but it costs very little disk space to keep them around just in case. So why not let OmniFocus do its thing anyway? Even at two backups a day and a very large database, it'll take you weeks or even months to hit 1 GB of backups.

Like pvonk suggested, I use Hazel to delete backups older than two weeks, so my backup folder stays quite small.