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I also have the problem "no root can reach all tail transactions" when syncing to my own web dav server. Omnifocus had been working very well for weeks. I am running the release candidate 2 on my computer and the last release was a while ago so this problem is a bit of a surprise because nothing has really changed. I am also using the Omnifocus for iphone 1.0.3. I just renamed the corrupt omnifocus file and synced everything again and it seems to be working.