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One useful trick when there's some question as to whether or not you've gotten all the changes synced is to add an action to the Inbox and see if it gets synced over to the other device. Because OmniFocus adds new transactions in a chain, if the last thing added makes it, everything else must have done so also. If it still seems like changes to the order, etc. have not been synced, that's a clue that perhaps the issue has to do with display configuration or the like rather than a failure to sync.