[Brian]

Sorry for the confusion/trouble!

If you search for some of the items you entered during this morning's session on the iPad, do they appear in the search results?

Syncing can trigger the app to Clean Up, which moves (but does not delete) items in the database. For example: actions that were assigned to projects may have been moved out of the inbox, but they aren't gone.

That confuses folks sometimes...

If that doesn't describe what you saw, Bill's right. Contact us and we can help. Generally, OmniFocus is going to notify you about any sort of situation that could cause data to be deleted/overwritten and ask for permission before proceeding. Haven't heard about anything bypassing that in a long time, but it's always possible there's something we haven't encountered before in there somewhere.