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Here's a workaround I found...

Drop all of your nodes on the shared layer.

Draw all of the connections you need for your diagram version on the shared layer.

Select all of the connections and other objects specific to the diagram version.

Right click over the local layer and choose Move Selection to Layer.

This seems to drop the endpoints in the right place, etc. Naturally it won't move with your objects if you change the base layer, but if you're pretty sure where you want those objects to appear it should work pretty well. Just trying it out myself.