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Okay, here's a new version that checks for discrepancies between actual and effective Start and Due dates and warns you if there's a mismatch. (You can turn off the warning if you want.)

It also lets you skip the second dialog box if you always change the same parameters (Due only or Start and Due).

I opted not to change the ancestors because that seemed like it would introduce too much uncertainty into the workflow. A warning seemed like a better middle ground. (I'd have loved to make the Growl notifications clickable to open the project in question, but you can't do that with AppleScript.)

Let me know what you think of this change.