Ah, not a problem. If you're interested in using Rob's Filter scripts, it should be a 1-line change to make them not include the notes.
Somewhere in the middle of the script, you'll find a few lines that look like this:
Code:
-- COPY FILTERED ROWS INTO NEW DOCUMENT
duplicate refRows to the end of the children of docFiltered
set expanded of rows of docFiltered to false
Just add a line following that:
Code:
set note of rows of docFiltered to missing value
and save the script with a suitable name. A bit like drawing a moustache on the Mona Lisa, to be sure :-)