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Ah, not a problem. If you're interested in using Rob's Filter scripts, it should be a 1-line change to make them not include the notes.

Somewhere in the middle of the script, you'll find a few lines that look like this:
Code:
		-- COPY FILTERED ROWS INTO NEW DOCUMENT
		duplicate refRows to the end of the children of docFiltered
		set expanded of rows of docFiltered to false
Just add a line following that:

Code:
set note of rows of docFiltered to missing value
and save the script with a suitable name. A bit like drawing a moustache on the Mona Lisa, to be sure :-)