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I've also been trying today to do this in order to submit a scientific paper - while in theory Omnigraphsketcher is better than my other software tools, it can be frustrating at times. The only way I've been able to manage it is to get it to "snap" to a vertical line I've drawn first for each axis tick (again quite longwinded) - though my labels now overlap the x-axis as my labels are quite long.

If there is another method I'd like to hear it - I gave up in the end and used excel (which doesn't output as nice as Omnigraphsketcher).