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If I have two windows open, both on different spaces, and I then go to edit something, the window I moved to another space will usually pop over to the other space where I originally opened OmniFocus. So then both windows will now reside on the same space.

Does anyone else see that issue? Can it be resolved?

I am using the latest version of Snow Leopard on a MacBook Pro with an extra monitor attached. I work with 9 Spaces.

Thanks in advance for your help :)