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I'm not sure I can help there - I've simply set up an https web site for all my data transfer activity with it's own hostname and dns entry (both inside and outside the firewall - these resolve to different IP addresses depending if my laptop/iphone is on my home net or out in the big bad world). I've then mapped it's root to a directory on my sites volume and use webdav to a subdirectory (which is imaginatively called Omnifocus) but this is just a home rig. It gives me some respite care from wrestling with SAP on 64bit Windows by day :-).

Let me know if you get the root directory perms issue sorted out - it doesn't feel right at the moment!

Good luck,