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Sorry for the trouble here! I'm not seeing this in my copy of OmniFocus for iPad, but that may just mean that my configuration isn't triggering what you're seeing for some reason.

Hmmm... do you have the Perspectives item in the sidebar active, and if so, how many of your perspectives have been added to the top-level sidebar? If it's enough to fill the sidebar in landscape mode, the sidebar does become scrollable. Maybe the sidebar has been scrolled just a little bit, causing the "Projects" item to overlap slightly with the header?