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I have not used the iSync disk problem at all and this error has just started happening to me.

When I watch my upload speed while the syncing is happening, the upload speeds are full bandwidth, until about a min into the sync. Then they drop down from 500kb to 100kb to 30kb. The syncing continues for about 30 min, at the end of the syncing I get an error:

Unable to perform WebDAV operation.

The idisk.me.com server returned "not found" (404) in response to a request to "MOVE /myusername/Documents/OF/OmniFocus.ofocus-copy-in-progress-oS6M_yyg61F".

(I replaced my real username with myusername in the above error)

If I try and sync again I get an error saying no root transactions found.

I checked the console and found this error right around the time my bandwidth dropped down.

10/4/08 3:24:48 PM OmniFocus[38556] Exception raised:
---------------------------
Mask: 0x00000100
Name: NSAccessibilityException
Reason: "AXSubrole" attribute unsupported by: <NSButtonCell: 0x178fad20>
Stack Trace:
NSExceptionHandlerExceptionRaiser (in ExceptionHandling) + 185
objc_exception_throw (in libobjc.A.dylib) + 40
-[NSException raise] (in CoreFoundation) + 17
NSAccessibilityAttributeValue (in AppKit) + 160
CopyAppKitUIElementAttributeValueNoCatch (in AppKit) + 81
CopyAttributeValue (in AppKit) + 492
_AXXMIGCopyAttributeValue (in HIServices) + 287
_XCopyAttributeValue (in HIServices) + 498
mshMIGPerform (in HIServices) + 517
CFRunLoopRunSpecific (in CoreFoundation) + 3896
CFRunLoopRunInMode (in CoreFoundation) + 88
RunCurrentEventLoopInMode (in HIToolbox) + 283
ReceiveNextEventCommon (in HIToolbox) + 374
BlockUntilNextEventMatchingListInMode (in HIToolbox) + 106
_DPSNextEvent (in AppKit) + 657
-[NSApplication nextEventMatchingMask:untilDate:inMode:dequeue:] (in AppKit) + 128
-[NSApplication _realDoModalLoopeek:] (in AppKit) + 563
-[NSApplication runModalForWindow:] (in AppKit) + 286
-[CredentialsPrompt promptForCredentialsModally] (in OmniFocus) + 117
+[SyncManager _mainThreadPromptForCredentialsWithProtectionSpace :resultHolder:] (in OmniFocus) + 159
-[OFIObjectSelectorObjectObject invoke] (in OmniFoundation) + 77
-[OFQueueProcessor processQueueUntilEmpty:forTime:] (in OmniFoundation) + 386
-[OFQueueProcessor processQueueUntilEmpty:] (in OmniFoundation) + 57
-[OFQueueProcessor processQueueUntilEmpty] (in OmniFoundation) + 41
-[OFRunLoopQueueProcessor processQueueUntilEmpty] (in OmniFoundation) + 99
__NSFireMachPort (in Foundation) + 339
__CFMachPortPerform (in CoreFoundation) + 117
CFRunLoopRunSpecific (in CoreFoundation) + 3896
CFRunLoopRunInMode (in CoreFoundation) + 88
RunCurrentEventLoopInMode (in HIToolbox) + 283
ReceiveNextEventCommon (in HIToolbox) + 374
BlockUntilNextEventMatchingListInMode (in HIToolbox) + 106
_DPSNextEvent (in AppKit) + 657
-[NSApplication nextEventMatchingMask:untilDate:inMode:dequeue:] (in AppKit) + 128
-[NSApplication run] (in AppKit) + 795
-[OAApplication run] (in OmniAppKit) + 386
NSApplicationMain (in AppKit) + 574
_start (in OmniFocus) + 216
start (in OmniFocus) + 41
0x2

---------------------------

Here is what I have tried to remedy the situation:
-Through the mobile me website, deleted all OF documents and re-synced.
-Through the mobile me website, created a new folder in the documents folder called /OF/ and attempted syncing to that folder.
-Turned off all syncing and signed out of mobile me. Logged back into mobile me and turned on OF syncing.
-deleted iDisk password in login keychain.