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There was one other thing I did.

I use iDisk for my syncing. I was syncing my home file. I deleted all my omnifocus files from iDisk, and synced my work file to the iDisk for use with the iPhone.

My work file has as many if not more items that my home file. But possibly deleting all my OmniFocus files from the iDisk and starting the syncing again may have helped something?