I believe that the print command actually does a separate layout from what you see in the window. If the width and height of your window are close to the width and height of the paper you're printing to, you may get the two to look similar, but otherwise, you probably want us to lay the two out differently. :-)
If there are specific things you're having trouble with, it'll probably help for you to include some screenshots of what you are seeing in an email sent to the
support ninjas.
(You can take a screenshot by pressing command-shift-4, which will give you a selection cursor. Tap your Space key, click on the window you want to capture, and when you release the mouse the image will be saved to your desktop as 'Picture 1', 'Picture 2', etc.)
You can then drag the images to an email message and send them to us.